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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs6696616 chr1:219169426 G/T 0.000173 406 14.77 19.03 18.63 KM Plot
LGG rs6702023 chr1:219167752 C/G 0.000173 407 14.77 18.72 18.63 KM Plot
LGG rs6702478 chr1:236520149 C/T 0.000122 406 15.57 16.28 4 KM Plot
LGG rs6709371 chr2:86867722 T/C 0 403 15.83 11.77 6.38 KM Plot
LGG rs67205460 chr10:1090366 C/T 1.84E-7 401 15.93 14.8 8.97 KM Plot
LGG rs6721186 chr2:131664103 G/A 4.35E-5 406 15.2 16.23 5.45 KM Plot
LGG rs6738970 chr2:55513738 C/T 4.46E-5 400 18.7 15.73 15.18 KM Plot
LGG rs6739348 chr2:55513871 G/C 4.46E-5 400 18.7 15.73 15.18 KM Plot
LGG rs67400908 chr22:42816762 CGAGA/C 5.87E-8 401 15.3 17.4 4.4 KM Plot
LGG rs6741710 chr2:114461761 T/G 0 405 15.67 14.53 0.23 KM Plot
LGG rs6751800 chr2:114461950 G/A 0 406 15.63 14.53 0.23 KM Plot
LGG rs67541379 chr21:45578384 CG/C 8.61E-5 401 4.98 16.08 15.37 KM Plot
LGG rs6758373 chr2:86874410 G/A 0 406 15.78 13.23 6.38 KM Plot
LGG rs6762738 chr3:100923230 C/T 1.75E-5 407 12.15 14.85 15.93 KM Plot
LGG rs676328 chr5:41505689 C/T 1.26E-6 407 8.97 17.07 15.17 KM Plot